PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g00729.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 96aa    MW: 10524.9 Da    PI: 10.1054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g00729.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-09856247
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                              g+WT+   + + +a + + ++   +W+ +a+ +g g+t++++k ++ k+
  Peaxi162Scf00016g00729.1  8 GSWTAKQNKAFEKALAVYDKEtpdRWSNVAKAVGGGKTAEEVKRHYEKL 56
                              78*****************99*************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-8659IPR001005SANT/Myb domain
PROSITE profilePS500906.806857IPR017877Myb-like domain
PfamPF002493.8E-7856IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-5858IPR009057Homeodomain-like
SuperFamilySSF466894.37E-12864IPR009057Homeodomain-like
CDDcd001671.57E-6957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSSQGSVGSW TAKQNKAFEK ALAVYDKETP DRWSNVAKAV GGGKTAEEVK RHYEKLVHDI  60
MMQKSLAPAS NETKKHATLA TTLQHLLQEN KPASTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23260360RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473084.16e-33PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1732e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLG7IVT68e-27G7IVT6_MEDTR; Transcription factor radialis-like protein
STRINGPOPTR_0002s03640.14e-26(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2491422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-26RAD-like 6